The interesting part from our phylomemetic tree of batik, is that we are not excluded any batik ornamentation from the geographical localities where they were grown. All of batik motifs known to be existing in Indonesian archipelago are included in our analytical method and let the data talks about the obtained clustering. Thus, from our calculation and computation to generate the cladistic tree, at least we could discover four branches of the batik developed from generations to generations in Indonesian archipelago. The first branch is where batik motifs from Rembang, Yogyakarta, and Solo is highly clustered. It is interesting to discover that the latest two regions has been confirmed as the center of keraton in Indonesia, and in batik traditions, both are where Batik Vorstenlanden is grown. However, the existence of batik motif from Rembang (also known as Lasem Batik) is not inconsistent at all, since even though Rembang batik is frequently classified as sort of batik from coastal area, this region is one of the oldest place where Islamic civilization was begun throughout Java [8]. Thus, it is very possible, batik ornamentations from Rembang were inspiring or being inspired from the two other places. The second branch is the place where batik motifs from Pekalongan, Cilacap, Banyumas, and Kebumen are highly clustered. Those are the centrals of batik ornamentation frequently categorized as those from coastal areas for their geographical aspects as well as the specific ornamentations. The third branch makes our observation through the phylomemetic tree even become more interesting, for this is where batik motifs from Western Java is dominated, be it from Inderamayu, Cirebon, Tegal, Garut, Banten, and even Bandung, where the contemporary batik motifs are developed and improved so fertile. From this fact, we can learn that there exist unique differences between batik motifs from western part of Java island with those from their eastern counterpart. Interestingly, the phylomemetic tree presents this solely by incorporating the motifs employed in our analysis, while some anthropological and aesthetic observation strongly confirm it.